Skip to contents

Computes gene expression tissue specificity (GETSI) scores and entropy from RNA-seq data. The input should be a named list of Dataframe objects, each containing differential expression data for one cell type.

Usage

spicey_getsi(rna_da)

Arguments

rna_da

A named list of Dataframe objects, typically one per cell type, containing RNA differential expression data with columns such as avg_log2FC, p_val, gene_id, etc.

Value

A Dataframe object with GETSI scores and entropy values in the metadata columns.